This is a preview instance. Do not rely on this data for real analyses.
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PPD_003GU3Z.1
Download
Download FASTA
Download metadata TSV
DENV-1/Comoros/DENV1-85638-3/2026-01-31
T. Fourie,
R. Klitting,
L. Pezzi,
L. Bosio,
G. Priorkowski,
G. Grard,
G. Durand,
X. de Lamballerie,
N. Traversier,
M.-C. Jaffar,
A. Nazli,
M. Peden,
M. Geulen,
T. Canivez,
G. Piorkowski &
R. Amaral
CNR Arbovirus, CNR Arbovirus
Sample details
Collection date
2026-01-31
Sampling location
Comoros
Isolate name
DENV1-85638-3
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-22 16:20
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage & Serotype
Lineage
1III_A.2
Serotype
DENV-1
INSDC
INSDC accession
PZ385158.1
NCBI release date
2026-05-16
NCBI update date
2026-05-16
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ385158.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-22 16:18:33 UTC
Date released
2026-05-22 17:13:33 UTC
Earliest release date
2026-05-16
Alignment and QC
Length
10562 (63.9%)
# of SNPs
566
# of deleted bases
18
# of unknown bases
3721
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
G
37
A
A
112
G
T
171
G
T
208
C
T
230
A
T
244
C
T
274
C
G
302
A
C
328
T
G
340
A
G
349
A
A
355
G
A
363
G
T
368
C
G
388
A
T
397
C
C
412
T
T
442
C
Show more
Deletions
10296-10302, 10308-10318
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
L
46
M
C:
G
70
S
C:
N
90
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
I
293
T
E:
M
297
V
E:
V
322
M
E:
V
428
M
E:
I
436
V
E:
I
439
V
NS1
NS1:
V
89
I
NS1:
V
93
A
NS1:
S
94
N
NS1:
A
98
T
NS1:
V
128
T
NS1:
N
139
D
NS1:
N
146
D
NS1:
I
162
V
NS1:
V
178
M
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
I
15
V
NS2A:
G
35
A
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
A
64
V
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
A
147
T
NS2A:
V
155
I
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
I
171
V
NS2A:
I
174
V
NS2A:
L
199
F
NS2B
NS2B:
V
11
I
NS3
NS3:
A
91
T
NS3:
A
112
T
NS3:
R
185
K
NS3:
V
221
I
NS4A
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
A
93
V
NS4B
NS4B:
A
18
V
NS4B:
A
19
V
NS4B:
A
27
T
NS4B:
V
31
I
NS5
NS5:
V
270
I
NS5:
E
559
Q
NS5:
N
585
S
NS5:
A
616
V
NS5:
T
635
N
NS5:
P
636
S
NS5:
V
642
A
NS5:
K
647
E
NS5:
T
651
V
NS5:
I
669
T
NS5:
F
881
Y
prM
prM:
S
15
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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