This is a preview instance. Do not rely on this data for real analyses.
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PPD_003GTXB.1
Download
Download FASTA
Download metadata TSV
DENV-2/Comoros/DENV2-81091-3/2025-04-16
T. Fourie,
R. Klitting,
L. Pezzi,
L. Bosio,
G. Priorkowski,
G. Grard,
G. Durand,
X. de Lamballerie,
N. Traversier,
M.-C. Jaffar,
A. Nazli,
M. Peden,
M. Geulen,
T. Canivez,
G. Piorkowski &
R. Amaral
CNR Arbovirus, CNR Arbovirus
Sample details
Collection date
2025-04-16
Sampling location
Comoros
Isolate name
DENV2-81091-3
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-22 16:20
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage & Serotype
Lineage
2II_A.2.2
Serotype
DENV-2
INSDC
INSDC accession
PZ385152.1
NCBI release date
2026-05-16
NCBI update date
2026-05-16
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ385152.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-22 16:18:33 UTC
Date released
2026-05-22 17:13:33 UTC
Earliest release date
2026-05-16
Alignment and QC
Length
10672 (87.5%)
# of SNPs
720
# of deleted bases
2
# of unknown bases
1289
Nucleotide mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
C
54
T
A
122
G
A
219
G
A
228
G
G
252
A
T
292
C
G
297
A
A
309
G
A
318
G
A
324
G
T
330
C
T
336
C
C
348
T
T
397
A
C
401
T
T
414
C
T
423
C
T
431
C
Show more
Deletions
10293, 10294
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001474.2
reference
Substitutions
C
C:
K
9
R
C:
S
101
T
C:
A
102
V
C:
V
112
A
E
E:
M
6
I
E:
E
71
A
E:
R
120
T
E:
V
129
I
E:
H
149
N
E:
I
164
V
E:
I
170
V
E:
E
360
G
E:
N
390
S
E:
I
462
V
E:
T
478
S
E:
I
484
V
NS1
NS1:
V
84
A
NS1:
S
128
L
NS1:
T
146
A
NS1:
K
174
R
NS1:
N
222
S
NS1:
L
247
F
NS1:
I
264
T
NS1:
T
265
A
NS1:
D
281
E
NS2A
NS2A:
V
5
I
NS2A:
I
33
V
NS2A:
V
41
M
NS2A:
T
63
A
NS2A:
R
94
K
NS2A:
I
116
M
NS2A:
I
120
M
NS2A:
V
133
I
NS2A:
K
135
R
NS2A:
M
136
V
NS2A:
R
138
K
NS2A:
I
152
V
NS2A:
V
155
A
NS3
NS3:
I
333
M
NS3:
V
351
I
NS3:
V
395
I
NS4A
NS4A:
D
23
N
NS4A:
R
76
K
NS4A:
I
93
T
NS4B
NS4B:
L
13
F
NS4B:
I
18
T
NS4B:
V
48
I
NS4B:
F
112
L
NS5
NS5:
I
5
T
NS5:
S
15
N
NS5:
M
70
L
NS5:
P
154
S
NS5:
E
169
D
NS5:
A
196
T
NS5:
Y
247
H
NS5:
I
267
V
NS5:
I
271
T
NS5:
H
288
Y
NS5:
E
289
G
NS5:
V
335
I
NS5:
R
430
G
NS5:
E
616
G
NS5:
S
631
G
NS5:
I
637
A
NS5:
Q
644
R
NS5:
N
645
D
NS5:
I
687
V
NS5:
A
865
T
prM
prM:
G
7
N
prM:
K
16
R
prM:
R
19
K
prM:
S
28
E
prM:
A
29
D
prM:
I
37
M
prM:
M
49
I
prM:
K
52
N
prM:
R
55
L
prM:
I
56
L
prM:
T
57
R
prM:
E
58
Q
prM:
T
59
N
prM:
D
62
E
prM:
V
64
I
prM:
A
70
S
prM:
E
72
S
prM:
S
81
T
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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