PPD_002JM5Y.1

France/PPD_002JM5Y.1/2024

M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date

2024

Sampling location

France

Isolate name

3445

Data use terms

Changed	User	Data use terms
2026-05-22 16:13	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

Lineage

Segment S Lineage

III

INSDC

INSDC accession S

PV976886.1

NCBI release date

2025-08-10

Host

ticks (Ixodoidea)

Submission details

Submission ID

PV976886.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-22 16:12:42 UTC

Date released

2026-05-22 16:20:51 UTC

Earliest release date

2025-08-10

Alignment and QC

Length S

1531 (54.5%)

# of SNPs S

141

# of inserted bases S

# of deleted bases S

# of unknown bases S

627

# of frame shifts S

# of stop codons S

Frame shifts S

NP:31-93(nt:146-334),NP:168-230(nt:557-744),NP:252-483(nt:808-1504)

Stop Codons S

NP:135,NP:156

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

C166T
C187T
G189A
T199C
G202A
A209G
T220C
T223C
C235T
C241T
A243C
C244A
G245T
C246G
A247T
T250C
G262A
G271A

Deletions

S

483-485, 584-586, 665, 745, 803-807, 857, 858

Insertions

S

ins_145:C, ins_247:CGC, ins_334:CC, ins_556:A, ins_567:G

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references