This is a preview instance. Do not rely on this data for real analyses.

PPD_001FL81.1

Portugal/PPD_001FL81.1/2025-10-17
R. Gutierrez-Lopez, F. Amaro, V. Borges, M. P. Sanchez-Seco, H. Costa Osorio, H. Cortes, D. Sobral, J. P. Gomes, A. Vazquez & L. Ze-Ze

Instituto Nacional de Saude Dr. Ricardo Jorge, Lisboa

Sample details

Collection date
2025-10-17
Sampling location
Portugal
Isolate name
PTCulexWNV_SM40_INSA2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 16:07insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
1A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-05-14
NCBI update date
2026-05-15
Raw reads accession

Host

Host

Submission details

Submission ID
OZ470013.1
Submitting group
Date submitted
2026-05-22 16:06:50 UTC
Date released
2026-05-22 16:19:50 UTC
Earliest release date
2026-05-14

Alignment and QC

Length
10976 (99.5%)
# of SNPs
484

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T195A
  • T234C
  • C282T
  • C340T
  • G354A
  • C422T
  • G447T
  • A448G
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • G786A
  • T826C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A70S
  • NS1:D310E

NS2A

  • NS2A:L158M

NS2B

  • NS2B:V103A

NS3

  • NS3:I175V
  • NS3:P249T
  • NS3:T356I
  • NS3:I462V

NS4A

  • NS4A:A85V

NS4B

  • NS4B:E249D

NS5

  • NS5:K280R
  • NS5:K432R

capsid

  • capsid:T109I
  • capsid:I118V

env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
  • env:N475S
Deletions
N/A
Insertions
N/A

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