This is a preview instance. Do not rely on this data for real analyses.

PPD_0002ZMN.1

YFV/Sierra_Leone/KGH855/2024-11-13
J. D. Sandi, T. Brock-Fisher, T. M. P. S. Kallon, M. F. Paye, I. U. Fofanah, D. Nosamiefan, M. S. Kamara, C. Wilkason, I. Baudi, C. Tomkins-Tinch, C. I'Anson, J. Perkar, A. Ozonoff, D. Park, C. Happi, P. Sabeti & D. S. Grant

Kenema Government Hospital, Viral Hemorrhagic Fever (Vhf) Laborarory, Laboratory

Sample details

Collection date
2024-11-13
Sampling location
Sierra Leone
Isolate name
KGH855

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 16:05insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
V

INSDC

INSDC accession
NCBI release date
2025-12-16
NCBI update date
2025-12-16

Host

Host

Submission details

Submission ID
PX571057.1
Submitting group
Date submitted
2026-05-22 16:04:49 UTC
Date released
2026-05-22 16:09:08 UTC
Earliest release date
2025-12-16

Alignment and QC

Length
10611 (97.7%)
# of SNPs
454
# of ambiguous bases
2

Nucleotide mutations

Mutations called relative to the NC_002031.1 reference

Substitutions

  • T130C
  • C262T
  • T284C
  • A304G
  • A313G
  • G316A
  • G318A
  • T430C
  • T432C
  • C449T
  • T455C
  • C464A
  • G466A
  • T467C
  • A473G
  • C535T
  • T553C
  • A574C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_002031.1 reference

Substitutions

2K

  • 2K:A20V

C

  • C:R67K

E

  • E:R52G
  • E:V56A
  • E:V170A
  • E:I173T
  • E:T200K
  • E:I299M
  • E:F305S
  • E:S325P
  • E:R331K
  • E:R380T
  • E:V407A
  • E:T416A
  • E:N450S

M

  • M:F36L

NS1

  • NS1:F79L
  • NS1:K276R
  • NS1:V307I

NS2a

  • NS2a:I88V
  • NS2a:V118M
  • NS2a:A167T
  • NS2a:F169L
  • NS2a:A172T
  • NS2a:F183S
  • NS2a:I220L

NS2b

  • NS2b:L37I
  • NS2b:K54R
  • NS2b:L109I
  • NS2b:R126K

NS3

  • NS3:V195I
  • NS3:V280I
  • NS3:N485D
  • NS3:V515I
  • NS3:S613A
  • NS3:E614D

NS4a

  • NS4a:I58V
  • NS4a:V107I

NS4b

  • NS4b:N18D
  • NS4b:M95I
  • NS4b:M117T
  • NS4b:E145K
  • NS4b:H232Y

RdRPol

  • RdRPol:S2R
  • RdRPol:R22Q
  • RdRPol:I78T
  • RdRPol:V162M
  • RdRPol:K275R
  • RdRPol:S292T
  • RdRPol:A524S
  • RdRPol:T645A
  • RdRPol:E815G
  • RdRPol:M833V
  • RdRPol:K836E
  • RdRPol:L901P

prM

  • prM:F125L
Deletions
N/A
Insertions
N/A

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